CDS

Accession Number TCMCG051C24669
gbkey CDS
Protein Id XP_002311995.2
Location complement(join(1964165..1964225,1964655..1964710,1965088..1965144,1965689..1965839,1966028..1966076,1966191..1966284,1966357..1966429,1966525..1966625,1966731..1966810,1966915..1967386))
Gene LOC7479859
GeneID 7479859
Organism Populus trichocarpa

Protein

Length 397aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_002311959.3
Definition putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic isoform X1 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category J
Description RNA pseudouridine synthase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000154        [VIEW IN EMBL-EBI]
GO:0000455        [VIEW IN EMBL-EBI]
GO:0000470        [VIEW IN EMBL-EBI]
GO:0000488        [VIEW IN EMBL-EBI]
GO:0000489        [VIEW IN EMBL-EBI]
GO:0001522        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006412        [VIEW IN EMBL-EBI]
GO:0006518        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009501        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009657        [VIEW IN EMBL-EBI]
GO:0009982        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016853        [VIEW IN EMBL-EBI]
GO:0016866        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030490        [VIEW IN EMBL-EBI]
GO:0031118        [VIEW IN EMBL-EBI]
GO:0032544        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0042273        [VIEW IN EMBL-EBI]
GO:0042274        [VIEW IN EMBL-EBI]
GO:0043043        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043603        [VIEW IN EMBL-EBI]
GO:0043604        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901566        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCAGCATCGCTATCCACTCTCCATCTTCACCACCAACTCACCTTCTTCAGAAAACCCTCACTCTCCCTCCTCAACAAGTCCATCCGTCCCACACGCATCACCGCTTCTCTAGAATTCAACATCACCTTCGCCCCTCCTAAACCCAAACCCAAACTCCCTGCCAACCTCCAAACCGACGCCGCATCCCTCTCTCTCCCTCCAGGCCAGCTCTTCATTCCCTGGATAGTCCGCGGAGAAGATGGAAACCTCAAGCTCCAATCTAACCCTCCCGCGCGTCTCATCCACGCTATCGCCGATGCCAAAACACAACCAAAGAAAAAGAAAGACAAGGTGAAGAAAGAGAGTAGTGGAAATGTGAAGGCCAAGTTGGAAGCGGAGCCTACGCGGTCTAAGGCGGCGCGTAGGTTCTATAATGAGAATTTTAGAGACCAAGCGCAGCGGTTGAGTAAAGTTCTAGCCGCTGCCGGAGTGGCGTCGAGGAGGAGCAGTGAAGCGTTGATTTTTGAAGGCAAAGTGACTGTTAATGGTTCTGTGTGCAATACTCCACAGACTCGAGTTGATCCCGGGAGGGATGCTATTTATGTTAATGGAAATCGGCTTCCCAAGAAACTGCCCCCGAAAATCTATATTGCTCTCAATAAGCCAAAAGGGTACATTTGCTCGTTGGGGGAGAAAGAGTCTAAGTCTGTAATGTGCTTATTGGATGATTATTTTCAGAGTTGGGATAAAAGAAATCCAGGATTACCTAAGCCACGGCTATTTACTGTTGGACGACTTGATGTTGCCACAACTGGGTTGATTATCGTGACCAATGATGGAGACTTTGCCCAACAAATTGCACATCCATCGTCAAATTTATCGAAGGAATATATTGCAACAGTTGATGGTGTAGTAAGCAAGCGACATTTGTTTGCCGTCAGCGAAGGAACAGTCATTGAAGGTGTCCGTTGCGTCCCAGACTCTGTGGAGTTGTTACCACAACAACCAGATAGACCAAGACCTCGTCTTCGAATTGTGGTTCATGAAGGGAGGAACCATGAGGTCCGAGAACTAGTAAAAAATGCTGGGCTCGAGATTCATTCATTGAAACGTGTCCGCATTGGTGGTTTCAGACTCCCATCAGACCTCGGGCTTGGGAAGCATGCTGAGCTAAAACAAACTGATCTGAAGACTCTGGGATGGAAATGTTAA
Protein:  
MAASLSTLHLHHQLTFFRKPSLSLLNKSIRPTRITASLEFNITFAPPKPKPKLPANLQTDAASLSLPPGQLFIPWIVRGEDGNLKLQSNPPARLIHAIADAKTQPKKKKDKVKKESSGNVKAKLEAEPTRSKAARRFYNENFRDQAQRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDAIYVNGNRLPKKLPPKIYIALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQIAHPSSNLSKEYIATVDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQQPDRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDLKTLGWKC